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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015798073.1_cds_XP_016458376.1_5162
CDS Infomation

[gene=LOC107782047] [db_xref=GeneID:107782047] [protein=peptidyl-prolyl cis-trans isomerase PASTICCINO1-like] [protein_id=XP_016458376.1] [location=join(19537..19622,20193..20277,20406..20475,21221..21318,22512..22634,23292..23324,23551..23609,23734..23818,24099..24257,25445..25502,26545..26693,26861..26958,27102..27171,27296..27355,27722..27778,29134..29202,29391..29468,29557..29658,30237..30308,30389..30643)] [gbkey=CDS]
Sequence

ATGGCAGTAGTAGATGATGATGATCATGAGCAACAAGTTAAGCCACCACAAGAAAAGAAG
AAACCAGAGTCTGAGGATGATAAAAGAAGGAAAAAGATTGTTCCTGGAAGTTTGATGAAA
GCTGTGGTGAGGCCTGGTGGTGGCCAATCAAGACCTGCTGAGGGTGAACAGGTTATATAT
CATTGCACAGTTAGAACACTGGATGGAGTTACAGTTGAATCAACACGGTCAGAATTTGGA
GGCAAGGGTACCCCAATAAGACATGTTTTGGGAAAGAGCAAGTTGATTTTGGGATTGCTA
GAGGGGATTCCGACAATGTTGAAGGGCGAAGTTGCAATGTTCAAAATGAAACCTGAAATG
CACTATGGAGAGGAGGATTGTCCAGTTGCAGTTCCAGATAACTTTCCTAAGGATTCTGAG
CTTCATTTTGAGATTGAGCTGATTGAATTCTCCAAAGTCAAGGTGATAACTGCTGATCTT
GGAGTCCTAAAGAAGGTTATAGAAGAAGGACAAAGCTGGGAAACACCTCGGGAACCTTAC
GAAGTAAAAGCTTGGATTTCCGCAAAGTCGGGGGATGGGAAAGTGATTCTATCGCGGACT
CAGGATGAACCATATTTCTTCACATTTGGTAAATCTGAGGTACCCAAAGGTCTCGAACTG
GGAACGGGGACCATGTCACGTGGAGAGAAAGCAGTGATTTACGTTAAAAGTCAATATTAT
ACAGAATCACCTCTAATGCCTGTGGTAGAAGGTGTTGACGAAGTCCATTTCGAGGTTGAA
CTTGTCCATTTTGTTCAGGTGCGAGATGTGCTCGGAGATGGACGCCTCATAAAACGCCGA
ATTCGTGATGGAAGAGGTGAATTTCCTATGGATTGCCCTCTGCAAGACAGTCTACTGCGT
GTACACTACAAAGGATTGCTTCTTAATGAAGAAAAGACGGTATTCTATGATACAAGATTT
GACAACAATGGTCAGCCTTTGGAGTTCAGCTCTGGAGAAGGGCTTGTACCTCAAGGGTTT
GAAATGTGTGTTCGTTTGATGTTGCCTGGAGAGATAGCTCTTGTGACATGCCCGCCTGAT
TATGCTTATGACAAATTTGAAAGGCCAGCTAATGTTCCTGAAGGTGCTTATGTGCAGTGG
GAAATTGAGCTTCTTGACTTTAACACACCGAAGGACTGGACTGGTTTCAGTTTCAGAGAA
ATTATGGAAGATGTAGAGAAGATCAAAGGCACGGGTAACAGGCTTTTCAAGGAAGAGAAA
TTTGAACTAGCGAAAGCAAAGTATGAGAAGGTGCTTCGCGAGTTTAATCATGTTCATCCT
CAAGATGACGAGGAGGGAAAGGAATTTTCGAACACTAGGAACTTGTTGCATCTTAATGTT
GCTGCCTGCTTTCTGAAACTGGGAGAGCATAAGAAGTCAATTGAGGCGTGCAATAAGGTG
TTAGATGCAAATCCTGTTCATGTGAAAGCTCTCTATCGACGTGGGATGGCCTACATGGCT
TCTGGAGATTTCGAAGAAGCAAGAGCTGATTTTAATAAGATGATGAGCATCGACAAGTCA
TCCGAGGCGAGTGCTAAGGCAGCACTTTTGAAACTGAAAAAGGAGGAACAGGAAGTCGAG
AGGAGGGTTCGTAAGCAATTTAAGGGACTGTTTGACAAAAGGCCTGGTGAGATCTCTGAA
GTCGGGACTATTGACAGAGAGGATGAGGCTACAGGTGAAAATCTTGAGAAGGACGATCTT
GACAATTTAGACGGCCATGAAGAGAGAACTCATCAGACAACAGTGCCTCCACCTCGCTCA
GGTATTTTGTCCCAATTGAGAAAGCTTTTTGCATCTGTTGGCCTGAAGCGATGCACCATA
TTGTGA

Peptide Sequence

PEP ID

XP_016458376.1
PEP Infomation

PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Nicotiana tabacum]
Sequence

MAVVDDDDHEQQVKPPQEKKKPESEDDKRRKKIVPGSLMKAVVRPGGGQSRPAEGEQVIY
HCTVRTLDGVTVESTRSEFGGKGTPIRHVLGKSKLILGLLEGIPTMLKGEVAMFKMKPEM
HYGEEDCPVAVPDNFPKDSELHFEIELIEFSKVKVITADLGVLKKVIEEGQSWETPREPY
EVKAWISAKSGDGKVILSRTQDEPYFFTFGKSEVPKGLELGTGTMSRGEKAVIYVKSQYY
TESPLMPVVEGVDEVHFEVELVHFVQVRDVLGDGRLIKRRIRDGRGEFPMDCPLQDSLLR
VHYKGLLLNEEKTVFYDTRFDNNGQPLEFSSGEGLVPQGFEMCVRLMLPGEIALVTCPPD
YAYDKFERPANVPEGAYVQWEIELLDFNTPKDWTGFSFREIMEDVEKIKGTGNRLFKEEK
FELAKAKYEKVLREFNHVHPQDDEEGKEFSNTRNLLHLNVAACFLKLGEHKKSIEACNKV
LDANPVHVKALYRRGMAYMASGDFEEARADFNKMMSIDKSSEASAKAALLKLKKEEQEVE
RRVRKQFKGLFDKRPGEISEVGTIDREDEATGENLEKDDLDNLDGHEERTHQTTVPPPRS
GILSQLRKLFASVGLKRCTIL

Transcript Sequence

Gene sequence data has not been registered.